[slicer-users] EM Segmentation info beyond tutorial

Madan Rao rao.lms at gmail.com
Thu Mar 25 01:22:18 EDT 2010


Hello Pohl,

It seems the .mrml file I sent is very preliminary. I would like to send you
the one with complete
steps of sub-segmentation as my work progress further. I would like you to
comment on it (the template I am
going to send) before I start using it on patients.

regards,

AM Mohan Rao



On Tue, Mar 23, 2010 at 4:26 PM, Madan Rao <rao.lms at gmail.com> wrote:

> Hello Pohl,
>
> Thanks.
>
> I am attaching the mrml file here.
>
> Look forward to hearing from you.
>
> Regards,
>
> AM Mohan Rao
>
>
> On Tue, Mar 23, 2010 at 11:35 AM, pohl <pohl at csail.mit.edu> wrote:
>
>> I will write you an answer by tomorrow . Just can you send me the MRML
>> file that you are using for the segmentation
>>
>> Kilian
>> Madan Rao wrote:
>>
>>> Hello all,
>>>
>>> I have been trying EM Segmentation template builder for several months
>>> and able to
>>> generate results in many of my patients MRI/CT following instructions
>>> given in
>>> Automatic Segmentation by Sonia Pujol. Many times I had some difficulty
>>> or other
>>> which I was able to address with success.
>>> But what I am not able to solve, in spite of spending several weeks of
>>> trying was to
>>> understand what steps (other than those given in tutorial) needed to
>>> sub-segment
>>> the initial segments. For example, I can get the greymatter, whitematter
>>> and CSF in
>>> brain images. I am not confident beyond that: how to segment a part of GM
>>> or WM or
>>> a Hypothalamic nucleus?
>>>
>>> I must admit that I have some background knowledge in EM techniques and
>>> was involved
>>> in coding a differential diagnosis project using Prof.Jaakkola (of CSAIL
>>> of MIT ) Ph.D thesis.
>>>
>>> Specifically, I want to know which images from segmentation template
>>> results are used for
>>> target, moving images in sub-segmenting the GM or WM.
>>>
>>> I am enclosing segmentation result of a pt suspected cerebral edema (who
>>> had surgery for a brain tumor in 1996).
>>>
>>> Can anyone please help?
>>>
>>> AM Mohan Rao
>>>
>>>
>>>
>>>
>>>
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>>>
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>>
>>
>
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