[slicer-users] SPL- Brain atlas problems

Madan Rao rao.lms at gmail.com
Sun Mar 28 04:10:06 EDT 2010


Hello Dominik,

Same is the issue with right_middle_frontal_gyrus(1) at 2003 and 2027.

Which one is correct?

AM Mohan Rao

On Sun, Mar 28, 2010 at 12:41 PM, Madan Rao <rao.lms at gmail.com> wrote:

> Hello Dominik,
>
> Thanks.
>
> While checking the your reference, I found volume labels for
> left_cingulate_gyrus(1) is repeated twice at:
> 1002 and 1023.
>
> I am generating the volumes from the MPRAGE_CORRECTED.nrrd using these
> labels and found that
> left_cingulate_gyrus(1) in the atlas has two different volumes and shapes.
> Please see the attached files.
>
> Please let me know which one is correct?
>
> AM Mohan Rao
>
>
> On Sat, Mar 27, 2010 at 12:39 AM, Dominik Meier <meier at bwh.harvard.edu>wrote:
>
>> Hi Mohan
>>
>> for the time being you can also find a copy of the 2009 atlas in the
>> Registration Case Library:
>>
>>
>> http://na-mic.org/Wiki/index.php/Projects:RegistrationDocumentation:RegLib_11_AtlasThalamicLabelMerge
>>
>> in the download list pick either the "new atlas dataset" or "merged atlas
>> dataset". The latter contains additional labels for thalamic nuclei.
>>
>> Best,
>> Dominik
>>
>> ______________________________________________
>> DOMINIK MEIER, PH.D.
>> Assistant Professor of Radiology, Harvard Medical School
>> Center for Neurological Imaging, Brigham & Women's Hospital
>> 221 Longwood Avenue, RF396, Boston, MA 02115
>> Phone: 617 278-0800
>> Fax: 617 264-5154
>>
>>
>>
>> On Mar 26, 2010, at 12:57 PM, Madan Rao wrote:
>>
>> Hello all,
>>
>> What are the correct label numbers for pons and medulla oblongata in
>> SPL_PNL_Brain_Atlas2008?
>>
>> The numbers 151 and 152 given in the List: SPL-Brain Atlas Color File do
>> not generate any volume in Mask Image module.
>> Please note that the atlas shows colored labels for these parts.
>>
>> There is a color file: SPL-BrainAtlas-2009 Color File.txt in the Color
>> module, but I can't find the download site for
>> SPL-BrainAtlas-2009. The MultiModalAtlas_BiasCorrected_Data and
>> Multimodal-AtlasData do not have any labels.
>>
>> Can anyone please help?
>>
>> AM Mohan Rao
>>
>>
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>>
>>
>
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