[slicer-users] SPL- Brain atlas problems
mhalle at bwh.harvard.edu
Sun Mar 28 13:32:10 EDT 2010
We're actively editing these labels now. The 2009 Atlas is a
work-in-progress and should not be considered stable.
Thanks for your bug reports!
mhalle *at* bwh.harvard.edu
On 3/28/10 3:11 AM, Madan Rao wrote:
> Hello Dominik,
> While checking the your reference, I found volume labels for
> left_cingulate_gyrus(1) is repeated twice at:
> 1002 and 1023.
> I am generating the volumes from the MPRAGE_CORRECTED.nrrd using these
> labels and found that
> left_cingulate_gyrus(1) in the atlas has two different volumes and
> shapes. Please see the attached files.
> Please let me know which one is correct?
> AM Mohan Rao
> On Sat, Mar 27, 2010 at 12:39 AM, Dominik Meier <meier at bwh.harvard.edu
> <mailto:meier at bwh.harvard.edu>> wrote:
> Hi Mohan
> for the time being you can also find a copy of the 2009 atlas in the
> Registration Case Library:
> in the download list pick either the "new atlas dataset" or "merged
> atlas dataset". The latter contains additional labels for thalamic
> DOMINIK MEIER, PH.D.
> Assistant Professor of Radiology, Harvard Medical School
> Center for Neurological Imaging, Brigham & Women's Hospital
> 221 Longwood Avenue, RF396, Boston, MA 02115
> Phone: 617 278-0800
> Fax: 617 264-5154
> On Mar 26, 2010, at 12:57 PM, Madan Rao wrote:
>> Hello all,
>> What are the correct label numbers for pons and medulla oblongata
>> in SPL_PNL_Brain_Atlas2008?
>> The numbers 151 and 152 given in the List: SPL-Brain Atlas Color
>> File do not generate any volume in Mask Image module.
>> Please note that the atlas shows colored labels for these parts.
>> There is a color file: SPL-BrainAtlas-2009 Color File.txt in the
>> Color module, but I can't find the download site for
>> SPL-BrainAtlas-2009. The MultiModalAtlas_BiasCorrected_Data and
>> Multimodal-AtlasData do not have any labels.
>> Can anyone please help?
>> AM Mohan Rao
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