[slicer-users] SPL- Brain atlas problems

Michael Halle mhalle at bwh.harvard.edu
Sun Mar 28 13:32:10 EDT 2010


Mohan,

We're actively editing these labels now.  The 2009 Atlas is a 
work-in-progress and should not be considered stable.

Thanks for your bug reports!

--Michael Halle
mhalle *at* bwh.harvard.edu


On 3/28/10 3:11 AM, Madan Rao wrote:
> Hello Dominik,
>
> Thanks.
>
> While checking the your reference, I found volume labels for
> left_cingulate_gyrus(1) is repeated twice at:
> 1002 and 1023.
>
> I am generating the volumes from the MPRAGE_CORRECTED.nrrd using these
> labels and found that
> left_cingulate_gyrus(1) in the atlas has two different volumes and
> shapes. Please see the attached files.
>
> Please let me know which one is correct?
>
> AM Mohan Rao
>
> On Sat, Mar 27, 2010 at 12:39 AM, Dominik Meier <meier at bwh.harvard.edu
> <mailto:meier at bwh.harvard.edu>> wrote:
>
>     Hi Mohan
>
>     for the time being you can also find a copy of the 2009 atlas in the
>     Registration Case Library:
>
>     http://na-mic.org/Wiki/index.php/Projects:RegistrationDocumentation:RegLib_11_AtlasThalamicLabelMerge
>
>     in the download list pick either the "new atlas dataset" or "merged
>     atlas dataset". The latter contains additional labels for thalamic
>     nuclei.
>
>     Best,
>     Dominik
>
>     ______________________________________________
>     DOMINIK MEIER, PH.D.
>     Assistant Professor of Radiology, Harvard Medical School
>     Center for Neurological Imaging, Brigham & Women's Hospital
>     221 Longwood Avenue, RF396, Boston, MA 02115
>     Phone: 617 278-0800
>     Fax: 617 264-5154
>
>
>
>     On Mar 26, 2010, at 12:57 PM, Madan Rao wrote:
>
>>     Hello all,
>>
>>     What are the correct label numbers for pons and medulla oblongata
>>     in SPL_PNL_Brain_Atlas2008?
>>
>>     The numbers 151 and 152 given in the List: SPL-Brain Atlas Color
>>     File do not generate any volume in Mask Image module.
>>     Please note that the atlas shows colored labels for these parts.
>>
>>     There is a color file: SPL-BrainAtlas-2009 Color File.txt in the
>>     Color module, but I can't find the download site for
>>     SPL-BrainAtlas-2009. The MultiModalAtlas_BiasCorrected_Data and
>>     Multimodal-AtlasData do not have any labels.
>>
>>     Can anyone please help?
>>
>>     AM Mohan Rao
>>
>>
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>
>
>
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