[slicer-users] Wrong position for DICOM image

Luo, Jiajia jiajialuo2000 at gmail.com
Tue Apr 27 15:46:54 EDT 2010


Hi,

I am using slicer 3.4 to add DICOM through file->add volume. The position of
the DICOM image was wrong and I don't why (see attached picture). This is
the first time I meet this kind of problem in Slicer 3 (slicer 2 can load
this DICOM image). There may be something wrong with the header (attached
header file). Can anyone help to figure out what is the problem?

Thanks,

Jiajia
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C:\slicer2\OPII_214\DICOM\PDAX~1\E25776~1.DCM
----------------------------------------
(0002,0000) Group Length = 196
----------------------------------------
(0002,0001) [2]     - File Meta Version   = 1
(0002,0002) [26]    - Media Storage UID   = 1.2.840.10008.5.1.4.1.1.4
(0002,0003) [52]    - Media Instance UID  = 1.3.46.670589.11.17075.5.0.6704.2008030310122284969
(0002,0010) [20]    - Transfer Syntax     = 1.2.840.10008.1.2.1
(0002,0012) [28]    - Implementation      = 1.2.276.0.7230010.3.0.3.5.1
(0002,0013) [16]    - Version             = OFFIS_DCMTK_351 
(0008,0005) [10]    - Character Set       = ISO_IR 100
(0008,0008) [26]    - Image Type          = ORIGINAL\PRIMARY\M_SE\M\SE
(0008,0012) [8]     - Creation Date       = 03/03/2008
(0008,0013) [6]     - Creation Time       = 11:02:27
(0008,0014) [24]    - ??????????????????? = 1.3.46.670589.11.17075.5
(0008,0016) [26]    - SOP Class UID       = 1.2.840.10008.5.1.4.1.1.4
(0008,0018) [52]    - SOP Instance UID    = 1.3.46.670589.11.17075.5.0.6704.2008030310122284969
(0008,0020) [8]     - Study Date          = 03/03/2008
(0008,0021) [8]     - Series Date         = 03/03/2008
(0008,0022) [8]     - Acquisition Date    = 03/03/2008
(0008,0023) [8]     - Image Date          = 03/03/2008
(0008,0030) [6]     - Study Time          = 09:48:23
(0008,0031) [12]    - Series Time         = 10:10:19
(0008,0032) [10]    - Acquisition Time    = 10:10:19
(0008,0033) [10]    - Image Time          = 10:10:19
(0008,0050) [8]     - Accession Number    = 12076780
(0008,0060) [2]     - Modality            = MR
(0008,0070) [24]    - Manufacturer        = Philips Medical Systems 
(0008,0080) [16]    - Institution Name    =  3T Research 
(0008,0090) [22]    - Referring Physician = ^^MD 
(0008,0100) [0]     - ??????????????????? = 
(0008,0102) [4]     - ??????????????????? = 541934404
(0008,0104) [0]     - ??????????????????? = 
(0008,1010) [12]    - Station Name        = CONRESEARCH 
(0008,1030) [20]    - Study Description   = RESEARCH MRI PELVIS 
(0008,1032) [56]    - ??????????????????? = ?
(0008,103e) [8]     - Series Description  = PD AX 2 
(0008,1040) [4]     - ??????????????????? = 540168781
(0008,1070) [0]     - Operator's Name     = 
(0008,1080) [0]     - ??????????????????? = 
(0008,1090) [8]     - Model Name          = Achieva 
(0008,1111) [216]   - ??????????????????? = ?
(0008,1140) [306]   - ??????????????????? = ?
(0010,0010) [18]    - Patient Name        = OPII_214          
(0010,0020) [10]    - Patient ID          = 018577665 
(0010,0030) [8]     - Patient Birthdate   = 0502
(0010,0040) [2]     - Patient Sex         = F 
(0010,1030) [2]     - Patient Weight      = 70 Kilograms
(0010,21c0) [2]     - ??????????????????? = 4
(0018,0015) [6]     - ??????????????????? = PELVIS
(0018,0020) [2]     - Scanning Sequence   = SE
(0018,0021) [4]     - Sequence Variant    = OSP 
(0018,0022) [6]     - Scan Options        = OTHER 
(0018,0023) [2]     - MR Acquision Type   = 2D
(0018,0024) [0]     - Sequence Name       = 
(0018,0050) [2]     - Slice Thickness     = 4 
(0018,0080) [16]    - Repetition Time     = 2107.52392578125
(0018,0081) [2]     - Echo Time           = 30
(0018,0083) [2]     - Number of Averages  = 2 
(0018,0084) [10]    - Imaging Frequency   = 127.81374 
(0018,0085) [2]     - Imaged Nucleus      = 1H
(0018,0086) [2]     - Echo Numbers(s)     = 1 
(0018,0087) [2]     - Magnetic Field Stren= 3 
(0018,0088) [2]     - Space between Slices= 5 
(0018,0089) [4]     - ??????????????????? = 540357938
(0018,0091) [2]     - Echo Train Length   = 5 
(0018,0093) [4]     - Percent Sampling    = 100 
(0018,0094) [4]     - Pct Phase Field View= 100 
(0018,0095) [16]    - Pixel Bandwidth     = 218.050186157226
(0018,1000) [6]     - Device Serial Number= 17075 
(0018,1020) [14]    - Software Version    = 2.5.3\2.5.3.0 
(0018,1030) [14]    - Protocol Number     = PD AX 2 SENSE 
(0018,1081) [2]     - ??????????????????? = 8240
(0018,1082) [2]     - ??????????????????? = 8240
(0018,1083) [2]     - ??????????????????? = 8240
(0018,1084) [2]     - ??????????????????? = 8240
(0018,1088) [2]     - Heart Rate          = 0 
(0018,1100) [4]     - Reconstruction Dia. = 200 
(0018,1250) [14]    - Receiving Coil      = SENSE-Cardiac 
(0018,1251) [2]     - Transmitting Coil   = B 
(0018,1310) [8]     - Acquisition Matrix  = 
(0018,1312) [4]     - Phase Encoding Dir. = COL 
(0018,1314) [2]     - Flip Angle          = 90
(0018,5100) [4]     - Patient Position    = FFS 
(0020,000d) [48]    - Study Instance UID  = 1.2.840.113745.101000.206701.39482.6065.17991873
(0020,000e) [52]    - Series Instance UID = 1.3.46.670589.11.17075.5.0.6704.2008030310101995968
(0020,0010) [10]    - Study ID            = 257766503 
(0020,0011) [4]     - Series Number       = 1301
(0020,0012) [2]     - Acquisition Number  = 13
(0020,0013) [2]     - Image Number        = 1 
(0020,0032) [50]    - Image Position      = -96.336820587515\-111.01760087907\-156.82307018712
(0020,0037) [102]   - Image Orientation   = 0.99810707569122\0.03886961564421\0.04765984416007\-0.0383889339864\0.99920278787612\-0.0109602091833 
(0020,0052) [52]    - Frame of Reference  = 1.3.46.670589.11.17075.5.0.9368.2008030309464590001
(0020,0100) [2]     - ??????????????????? = 8241
(0020,0105) [2]     - ??????????????????? = 8241
(0020,1040) [0]     - Position Reference  = 
(0020,1041) [2]     - Slice Location      = 0 
(0028,0002) [2]     - Samples per Pixel   = 1
(0028,0004) [12]    - Photometric Interp. = MONOCHROME2 
(0028,0010) [2]     - Rows                = 256
(0028,0011) [2]     - Columns             = 256
(0028,0030) [16]    - Pixel Spacing       = 0.78125\0.78125 
(0028,0034) [4]     - Pixel Aspect Ratio  = 1\1 
(0028,0100) [2]     - Bits Allocated      = 16
(0028,0101) [2]     - Bits Stored         = 12
(0028,0102) [2]     - High Bit            = 11
(0028,0103) [2]     - Pixel Representation= 0
(0028,1050) [4]     - Window Center       = 1070
(0028,1051) [4]     - Window Width        = 1860
(0028,1052) [2]     - Rescale Intercept   = 0 
(0028,1053) [16]    - Rescale Slope       = 2.26862026862026
(0028,1054) [10]    - Rescale Type        = normalized
(0028,2110) [2]     - Lossy Compression   = 00
(0032,1032) [22]    - ??????????????????? =  MD
(0032,1060) [20]    - ??????????????????? = RESEARCH MRI PELVIS 
(0040,0241) [12]    - ??????????????????? = CONRESEARCH 
(0040,0244) [8]     - ??????????????????? = 20080303
(0040,0245) [6]     - ??????????????????? = 094823
(0040,0250) [8]     - ??????????????????? = 20080303
(0040,0251) [6]     - ??????????????????? = 094823
(0040,0253) [10]    - ??????????????????? = 257766503 
(0040,0254) [20]    - ??????????????????? = RESEARCH MRI PELVIS 
(0040,0260) [56]    - ??????????????????? = ?
(0040,0275) [136]   - ??????????????????? = ?
(0040,0321) [0]     - ??????????????????? = 
(0040,1001) [8]     - ??????????????????? = 12076780
(2001,0010) [22]    - ??????????????????? = Philips Imaging DD 001
(2001,1001) [4]     - ??????????????????? = 0
(2001,1002) [2]     - ??????????????????? = 8240
(2001,1003) [4]     - ??????????????????? = 0
(2001,1006) [2]     - ??????????????????? = 8270
(2001,1007) [2]     - ??????????????????? = 8277
(2001,1008) [2]     - ??????????????????? = 8241
(2001,1009) [4]     - ??????????????????? = 0
(2001,100a) [2]     - ??????????????????? = 8241
(2001,100b) [12]    - ??????????????????? = TRANSVERSAL 
(2001,100c) [2]     - ??????????????????? = 8270
(2001,100e) [2]     - ??????????????????? = 8270
(2001,100f) [2]     - ??????????????????? = 0
(2001,1010) [2]     - ??????????????????? = 20302
(2001,1011) [4]     - ??????????????????? = 0
(2001,1012) [2]     - ??????????????????? = 8270
(2001,1013) [4]     - ??????????????????? = 1
(2001,1014) [4]     - ??????????????????? = 1
(2001,1015) [2]     - ??????????????????? = 1
(2001,1016) [2]     - ??????????????????? = 0
(2001,1017) [4]     - ??????????????????? = 1
(2001,1018) [4]     - ??????????????????? = 30
(2001,1019) [2]     - ??????????????????? = 8270
(2001,101a) [12]    - ??????????????????? = 
(2001,101b) [4]     - ??????????????????? = 0
(2001,101c) [2]     - ??????????????????? = 20302
(2001,101d) [2]     - ??????????????????? = 8241
(2001,101f) [2]     - ??????????????????? = 20302
(2001,1020) [4]     - ??????????????????? = 541414228
(2001,1021) [2]     - ??????????????????? = 8270
(2001,1022) [4]     - ??????????????????? = 1073682823
(2001,1023) [2]     - ??????????????????? = 12345
(2001,1024) [2]     - ??????????????????? = 8270
(2001,1025) [2]     - ??????????????????? = 12339
(2001,105f) [372]   - ??????????????????? = ?
(2001,1060) [4]     - ??????????????????? = 1
(2001,1061) [2]     - ??????????????????? = 8270
(2001,1062) [2]     - ??????????????????? = 8270
(2001,1063) [10]    - ??????????????????? = ELSEWHERE 
(2001,107b) [2]     - ??????????????????? = 13105
(2001,1081) [2]     - ??????????????????? = 8241
(2001,1082) [2]     - ??????????????????? = 8245
(2001,1083) [10]    - ??????????????????? = 127.81374 
(2001,1084) [2]     - ??????????????????? = 8240
(2001,1085) [2]     - ??????????????????? = 8243
(2001,1086) [2]     - ??????????????????? = 8240
(2001,1087) [2]     - ??????????????????? = 18481
(2001,1088) [2]     - ??????????????????? = 8242
(2001,1089) [2]     - ??????????????????? = 8240
(2001,108a) [2]     - ??????????????????? = 8240
(2001,108b) [2]     - ??????????????????? = 8258
(2001,10f1) [24]    - ??????????????????? = 
(2005,0010) [26]    - ??????????????????? = Philips MR Imaging DD 001 
(2005,0011) [26]    - ??????????????????? = Philips MR Imaging DD 002 
(2005,0012) [26]    - ??????????????????? = Philips MR Imaging DD 003 
(2005,0013) [26]    - ??????????????????? = Philips MR Imaging DD 004 
(2005,0014) [26]    - ??????????????????? = Philips MR Imaging DD 005 
(2005,1000) [4]     - ??????????????????? = -1070579317
(2005,1001) [4]     - ??????????????????? = 1074591630
(2005,1002) [4]     - ??????????????????? = -1090140432
(2005,1004) [4]     - ??????????????????? = 1162760014
(2005,1008) [4]     - ??????????????????? = -1058620602
(2005,1009) [4]     - ??????????????????? = -1021761742
(2005,100a) [4]     - ??????????????????? = -1095048673
(2005,100b) [4]     - ??????????????????? = 1201251076
(2005,100c) [4]     - ??????????????????? = 0
(2005,100d) [4]     - ??????????????????? = 0
(2005,100e) [4]     - ??????????????????? = 1012121238
(2005,100f) [4]     - ??????????????????? = 808923185
(2005,1010) [4]     - ??????????????????? = 808859697
(2005,1011) [2]     - ??????????????????? = 8269
(2005,1012) [2]     - ??????????????????? = 8270
(2005,1013) [2]     - ??????????????????? = 20302
(2005,1014) [2]     - ??????????????????? = 8270
(2005,1015) [2]     - ??????????????????? = 8270
(2005,1016) [2]     - ??????????????????? = 8270
(2005,1017) [2]     - ??????????????????? = 8270
(2005,1019) [2]     - ??????????????????? = 8270
(2005,101a) [2]     - ??????????????????? = 0
(2005,101b) [2]     - ??????????????????? = 8270
(2005,101c) [2]     - ??????????????????? = 8270
(2005,101d) [2]     - ??????????????????? = 256
(2005,101e) [8]     - ??????????????????? = compose 
(2005,101f) [8]     - ??????????????????? = compose 
(2005,1020) [4]     - ??????????????????? = 0
(2005,1021) [2]     - ??????????????????? = 1
(2005,1022) [2]     - ??????????????????? = 8240
(2005,1023) [2]     - ??????????????????? = 0
(2005,1025) [2]     - ??????????????????? = 0
(2005,1026) [2]     - ??????????????????? = 8281
(2005,1027) [8]     - ??????????????????? = MINIMUM 
(2005,1028) [2]     - ??????????????????? = 8270
(2005,1029) [2]     - ??????????????????? = 8270
(2005,102a) [10]    - ??????????????????? = 265456015 
(2005,102b) [2]     - ??????????????????? = 100
(2005,102c) [2]     - ??????????????????? = 8270
(2005,102d) [2]     - ??????????????????? = 8240
(2005,102e) [2]     - ??????????????????? = 8270
(2005,102f) [2]     - ??????????????????? = 8270
(2005,1030) [4]     - ??????????????????? = 1157871714
(2005,1031) [2]     - ??????????????????? = 8270
(2005,1033) [4]     - ??????????????????? = 1130049208
(2005,1034) [2]     - ??????????????????? = 8281
(2005,1035) [6]     - ??????????????????? = PIXEL 
(2005,1036) [2]     - ??????????????????? = 8270
(2005,1037) [2]     - ??????????????????? = 8270
(2005,1038) [2]     - ??????????????????? = 8270
(2005,1039) [2]     - ??????????????????? = 8270
(2005,103b) [2]     - ??????????????????? = 8270
(2005,103c) [2]     - ??????????????????? = 8270
(2005,103d) [2]     - ??????????????????? = 102
(2005,103e) [408]   - ??????????????????? = 
(2005,105f) [8]     - ??????????????????? = UNKNOWN 
(2005,1060) [2]     - ??????????????????? = 12589
(2005,1061) [2]     - ??????????????????? = 20302
(2005,1063) [2]     - ??????????????????? = 0
(2005,106e) [2]     - ??????????????????? = 17747
(2005,106f) [2]     - ??????????????????? = 21325
(2005,1080) [0]     - ??????????????????? = 
(2005,1083) [0]     - ??????????????????? = 
(2005,1084) [0]     - ??????????????????? = 
(2005,1085) [0]     - ??????????????????? = 
(2005,1086) [2]     - ??????????????????? = 0
(2005,109e) [0]     - ??????????????????? = 
(2005,10a0) [4]     - ??????????????????? = 0
(2005,10a1) [6]     - ??????????????????? = SENSE 
(2005,10a2) [2]     - ??????????????????? = 8270
(2005,10a8) [2]     - ??????????????????? = 8240
(2005,10a9) [2]     - ??????????????????? = 17458
(2005,10b0) [4]     - ??????????????????? = 0
(2005,10b1) [4]     - ??????????????????? = 0
(2005,10b2) [4]     - ??????????????????? = 0
(2005,10c0) [2]     - ??????????????????? = 17747
(2005,1199) [4]     - ??????????????????? = 1
(2005,1200) [4]     - ??????????????????? = 1
(2005,1201) [4]     - ??????????????????? = 0
(2005,1213) [4]     - ??????????????????? = 1
(2005,1245) [2]     - ??????????????????? = 2
(2005,1249) [2]     - ??????????????????? = 0
(2005,1251) [2]     - ??????????????????? = 0
(2005,1252) [2]     - ??????????????????? = 1
(2005,1253) [2]     - ??????????????????? = 1
(2005,1325) [2]     - ??????????????????? = 8270
(2005,1326) [4]     - ??????????????????? = 0
(2005,1327) [4]     - ??????????????????? = 1279346002
(2005,1328) [8]     - ??????????????????? = ORIGINAL
(2005,1329) [4]     - ??????????????????? = 1112014848
(2005,1330) [56]    - ??????????????????? = PLUS_A_PLUS_B\PLUS_A_PLUS_B\PLUS_A_PLUS_B\PLUS_A_PLUS_B 
(2005,1331) [2]     - ??????????????????? = 0
(2005,1333) [12]    - ??????????????????? = 
(2005,1334) [8]     - ??????????????????? = UNKNOWN 
(2005,1335) [8]     - ??????????????????? = UNKNOWN 
(2005,1336) [4]     - ??????????????????? = 0
(2005,1337) [4]     - ??????????????????? = 0
(2005,1338) [4]     - ??????????????????? = 0
(2005,1339) [4]     - ??????????????????? = 0
(2005,1340) [6]     - ??????????????????? = PRE_FT
(2005,1341) [8]     - ??????????????????? = UNKNOWN 
(2005,1342) [4]     - ??????????????????? = 541346118
(2005,1343) [2]     - ??????????????????? = 8281
(2005,1344) [80]    - ??????????????????? = 
(2005,1345) [2]     - ??????????????????? = 20302
(2005,1346) [6]     - ??????????????????? = HERTZ 
(2005,1347) [4]     - ??????????????????? = 0
(2005,1348) [4]     - ??????????????????? = 541476431
(2005,1349) [4]     - ??????????????????? = 0
(2005,1350) [8]     - ??????????????????? = 
(2005,1351) [2]     - ??????????????????? = 0
(2005,1352) [2]     - ??????????????????? = 0
(2005,1355) [120]   - ??????????????????? = 
(2005,1356) [2]     - ??????????????????? = 20302
(2005,1357) [2]     - ??????????????????? = 0
(2005,1359) [4]     - ??????????????????? = 1065353216
(2005,1360) [4]     - ??????????????????? = 0
(2005,1361) [8]     - ??????????????????? = 
(2005,1362) [4]     - ??????????????????? = 0
(2005,1363) [4]     - ??????????????????? = 0
(2005,1364) [2]     - ??????????????????? = 20302
(2005,1370) [2]     - ??????????????????? = 0
(2005,1371) [0]     - ??????????????????? = 
(2005,1381) [2]     - ??????????????????? = 8243
(2005,1382) [4]     - ??????????????????? = 1
(2005,1391) [0]     - ??????????????????? = 
(2005,1392) [2]     - ??????????????????? = 8240
(2005,1393) [2]     - ??????????????????? = 12589
(2005,1396) [2]     - ??????????????????? = 20302
(2005,1397) [20]    - ??????????????????? = SNM3.T-D6000.Pelvis 
(2005,1398) [2]     - ??????????????????? = 20302
(2005,1399) [2]     - ??????????????????? = 20302
(2005,1400) [4]     - ??????????????????? = 542328153
(2005,1401) [4]     - ??????????????????? = 1
(2005,1402) [72]    - ??????????????????? = ?
(2005,1403) [4]     - ??????????????????? = 1
(2005,1406) [2]     - ??????????????????? = 0
(2005,1409) [2]     - ??????????????????? = 8240
(2005,140a) [16]    - ??????????????????? = 2.26862026862026
(2005,140b) [10]    - ??????????????????? = normalized
(2005,140e) [0]     - ??????????????????? = 
(2005,140f) [1070]  - ??????????????????? = ?
(2005,1412) [2]     - ??????????????????? = 8241
(2005,1413) [2]     - ??????????????????? = 8241
(2005,1414) [4]     - ??????????????????? = 1
(2005,1415) [4]     - ??????????????????? = 1
(2005,1416) [4]     - ??????????????????? = 541999437
(2005,1418) [24]    - ??????????????????? = STATIC FIELD\RF\GRADIENT
(2005,1419) [38]    - ??????????????????? = IEC_FIRST_LEVEL\IEC_NORMAL\IEC_NORMAL 
(2005,141b) [2]     - ??????????????????? = 8240
(2005,141c) [2]     - ??????????????????? = 8240
(2005,141d) [2]     - ??????????????????? = 8240
(2005,1426) [2]     - ??????????????????? = 8270
(2005,1428) [4]     - ??????????????????? = 0
(2005,142a) [8]     - ??????????????????? = INITIAL 
(2005,142b) [10]    - ??????????????????? = COMPLETED 
(2005,142c) [8]     - ??????????????????? = INITIAL 
(2005,142d) [10]    - ??????????????????? = COMPLETED 
(2005,1432) [2]     - ??????????????????? = 8270
(2005,1435) [2]     - ??????????????????? = 8270
(2005,143a) [26]    - ??????????????????? = datadefs $Revision: 7.6 $ 
(2050,0020) [8]     - ??????????????????? = IDENTITY
(7fe0,0010) [131072]- Pixel Data          = 
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