[slicer-users] load a FS surface label into 3D slicer

swallace at nmr.mgh.harvard.edu swallace at nmr.mgh.harvard.edu
Tue May 25 00:43:30 EDT 2010


If you're trying to load it as a volume, you will probably want it as a
.mgz file. Have you tried using the Freesurfer command mri_label2vol? It's
output can be .mgz:

http://surfer.nmr.mgh.harvard.edu/fswiki/mri_label2vol

Stuart


> Hi
>
> Yes, I've looked at the visualisation tutorial and that has been very
> helpful, but it doesn't cover what one would do with a custom label as
> it cannot be loaded as a volume or a model/scene file. I was just
> wondering if anyone else has encountered this problem before,
>
> Thanks,
>
> Prapti
>
>
> -----Original Message-----
> From: swallace at nmr.mgh.harvard.edu [mailto:swallace at nmr.mgh.harvard.edu]
>
> Sent: Tuesday, 25 May 2010 12:57 PM
> To: Prapti Gautam
> Cc: slicer-users at bwh.harvard.edu
> Subject: Re: [slicer-users] load a FS surface label into 3D slicer
>
> Hi Prapti-
>
> We have a 3D visualization of Freesurfer data module and tutorial on the
> slicer web page. Give that a look and let us know if you have any
> problems.
>
> Stuart
>
>>
>>
>> Hi,
>>
>>
>>
>> I am trying to load a custom-made FreeSurfer surface label in Slicer
> 3D
>> as a volume file, but have not been able to do so satisfactorily. I
> have
>> created a label file in the format of both .label and .annot .. Has
>> anyone encountered this problem before and has found a solution for it
> ?
>>
>>
>>
>> Thanks,
>>
>>
>>
>>
>>
>> Prapti
>>
>>
>>
>>
>>
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