[slicer-users] thalamic segmentation

swallace at nmr.mgh.harvard.edu swallace at nmr.mgh.harvard.edu
Tue Jun 1 16:16:28 EDT 2010

Hiya Jonathan,

We have a tutorial on visualization of Freesurfer data here (just FYI):


Are you starting from raw dicom/mgz and are looking for an automated
thalamus segmentation within Slicer?


> Hi,
> I noticed on the slicer training page that there is an example of merging
> the A0 atlas with segmentation of thalamic nuclei with the A1 atlas.
> However
> the training for segmentation with Slicer only segments grey, white, csf,
> skull, ect. Our raw data is in dicom format, and is processed with
> Freesurfer in mgz format. Is there a way to process this data through
> slicer
> for segmentation of thalamic nuclei?
> Thank you
> Jonathan DuBois
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