[slicer-users] Slicer3 misalignment

Andriy Fedorov fedorov at bwh.harvard.edu
Mon Aug 2 16:55:35 EDT 2010


Marianna,

As a temporary solution, you could probably set "Centered" flag in
"Add data" dialog for both grayscale and label volumes. Most likely
this will result in spatially aligned images.

AF



On Mon, Aug 2, 2010 at 16:49, Steve Pieper <pieper at bwh.harvard.edu> wrote:
> Hi Marianna -
>
> Can you make a small sample dataset and scene file available for testing?
>
> -Steve
>
> On Aug/2/10 12:21 PM, Marianna Jakab wrote:
>> Hello,
>>
>> I have a bunch of MR datasets segmented with Slicer2. When I am loading the scene file into Slicer3 the segmented files are not recognized as volume.
>> I went back to Slicer2 and saved the segmented file as nrrd and a new scene file with a newly saved nrrd file. Then I have opened the new scene file in Slicer3.4 and 3.6, the greyscale image and the label files are being improperly aligned.
>>
>> Any insight on this is nobly appreciated.
>>
>> Thank you,
>>
>> -Marianna
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