[slicer-users] [slicer-devel] getbuildtest error- Slicer3.6 checkout

swallace at nmr.mgh.harvard.edu swallace at nmr.mgh.harvard.edu
Wed Sep 29 14:35:30 EDT 2010


No luck:

[panamint:Slicer3] (nmr-dev-env) locate libsvn_fs_util
locate: can not open `/var/lib/mlocate/mlocate.db': No such file or directory

Using a centos 5 machine and the Martinos environment, but haven't run
into this error previously.

On Wed, September 29, 2010 2:24 pm, Steve Pieper wrote:
> Hi Stuart -
>
> That's odd - it looks like your svn command is failing when building
> numpy.  At least for me on a ubuntu machine, the file it's complaining
> about should be provided by the 'libsvn1' package and be installed in
> /usr/lib.  Can you try something like the command below and see if it
> shows up for you?
>
> pieper at boggs:~$ locate libsvn_fs_util
> /usr/lib/libsvn_fs_util-1.so.1
> /usr/lib/libsvn_fs_util-1.so.1.0.0
>
> I just tried deleting and rebuilding my python code and all worked fine.
>
> -Steve
>
> On 09/29/2010 01:39 PM, swallace at nmr.mgh.harvard.edu wrote:
>> Hi all,
>>
>> Get this error message when trying to run getbuildtest on Slicer3.6:
>>
>> panamint:swallace:1:31pm[96] ./Scripts/getbuildtest.tcl -t ""
>> Sourcing
>> /autofs/space/birn_061/users/swallace/Slicer/slicer-source/Slicer3/slicer_variables.tcl
>> Slicer3_HOME is
>> /autofs/space/birn_061/users/swallace/Slicer/slicer-source/Slicer3
>> making with make -j 4
>> running: svn switch http://svn.slicer.org/Slicer3/trunk
>> At revision 15105.
>>
>> running: sh ./Scripts/genlib.tcl
>> /autofs/space/birn_061/users/swallace/Slicer/slicer-source/Slicer3/../Slicer3-lib
>> -64
>> Sourcing
>> /autofs/space/birn_061/users/swallace/Slicer/slicer-source/Slicer3/slicer_variables.tcl
>> Slicer3_HOME is
>> /autofs/space/birn_061/users/swallace/Slicer/slicer-source/Slicer3
>> running: svn co http://svn.scipy.org/svn/numpy/branches/1.3.x numpy
>> Checked out revision 8716.
>>
>> running:
>> /autofs/space/birn_061/users/swallace/Slicer/slicer-source/Slicer3/../Slicer3-lib/python-build/bin/python
>> ./setup.py build --fcompiler=xxx
>> svn: error while loading shared libraries: libsvn_fs_util-1.so.0: cannot
>> open shared object file: No such file or directory
>> Traceback (most recent call last):
>>    File "./setup.py", line 104, in<module>
>>      FULLVERSION += svn_version()
>>    File "./setup.py", line 86, in svn_version
>>      raise ValueError("Error while parsing svn version ?")
>> ValueError: Error while parsing svn version ?
>>
>> child process exited abnormally
>> 1
>>      while executing
>> "error $ret"
>>      (procedure "runcmd" line 23)
>>      invoked from within
>> "runcmd $::Slicer3_LIB/python-build/bin/python ./setup.py build
>> --fcompiler=xxx"
>>      invoked from within
>> "if {  [BuildThis $::NUMPY_TEST_FILE "python"]&&
>> !$::USE_SYSTEM_PYTHON&&
>> [string tolower $::USE_PYTHON] == "on" } {
>>
>>      set ::env(PYTHONHOME) $::Sli..."
>>      (file "./Scripts/genlib.tcl" line 762)
>>
>> child process exited abnormally
>> ERROR: failed to run getbuildtest: sh ./Scripts/genlib.tcl
>> /autofs/space/birn_061/users/swallace/Slicer/slicer-source/Slicer3/../Slicer3-lib
>> -64
>>
>>
>>
>> I checkd out the code from  http://svn.slicer.org/Slicer3/trunk.
>>
>> Many thanks,
>>
>> Stuart
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>
>
>




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