[slicer-users] 3D rendering of a binarized image in nifti format

ZhuangJohnny mbiozl at hotmail.com
Tue Oct 12 00:49:37 EDT 2010

Dear Isaiah


Thanks for your help. It works, and the 3D rendering looks quite nice !


Many thanks and regards,
> Subject: RE: [slicer-users] 3D rendering of a binarized image in nifti format
> Date: Mon, 11 Oct 2010 23:47:12 -0400
> To: mbiozl at hotmail.com; slicer-users at bwh.harvard.edu
> Hi Johnny,
> 1) for surface-mesh model generation see the section on Model Maker in the
> Neurosurgical Planning Tutorial here:
> http://www.slicer.org/slicerWiki/index.php/Slicer_3.6:Training
> Also see the Interactive Editor tutorial on the same page for instructions on
> using the thresholding function - for a binary volume set both lower and upper
> threshold to 1 and it should work.
> 2) for GPU volume rendering select "Volume Rendering" from the modules list.
> Then set input volume as "Source", and the rendering should appear in a few
> seconds. Under the Rendering->Techniques tab choose the method, quality,
> interactiveness,etc.. Under Rendering->Volume Property can choose color table
> and the transfer function. Perhaps most importantly, to turn volume rendering
> OFF go to Rendering->Misc.
> If you need more info let us know,
> -Isaiah
> -----Original Message-----
> From: slicer-users-bounces at bwh.harvard.edu on behalf of ZhuangJohnny
> Sent: Mon 10/11/2010 9:54 PM
> To: slicer-users at bwh.harvard.edu
> Subject: [slicer-users] 3D rendering of a binarized image in nifti format
> Dear experts,
> I'm trying to create a 3D rendering volume of a binarized image (ROI) in nifti
> format from FSL software. 
> After searching the archive and training pages, however, i could not find a
> appropriate solution.
> Thank you in advance for any advice and help.
> Johnny 
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