[slicer-users] Dicom to analyze conversion -> orientation
inorton at bwh.harvard.edu
Wed Dec 15 23:20:48 EST 2010
If the other suggestions don't work, MRIcro will work with at least
(confirmed myself) Siemens mosaic data for conversion to analyze or nifti
On Wed, Dec 15, 2010 at 6:03 PM, Xiaodong Tao <xiaodong at gmail.com> wrote:
> Hello Pouria,
> You can try the module DicomToNrrdConverter in Slicer3.
> For mosaic format, 0020|0032 tag in dicom header may not be the real
> image position patient.
> Let me know how this works for you.
> On Wed, Dec 15, 2010 at 5:08 PM, pouria mojabi <Pouria.Mojabi at ucsf.edu>
> > Dear Experts,
> > Hope this email finds you all well.
> > I am struggling with Image Position(0020, 0032) and Image
> > 0037) in Dicom images for a while now. I have two conversion tools that
> > different results when they perform conversion from Dicom to Analyze
> > Debabler from LONI, outputs Analyze image in transverse unflipped format.
> > [176 x 256 x 256] and the one that SPM provides gives me coronal
> > with [256 x 256 x 176] being the dimension.
> > My Dicom's direction cosine is :
> > 0.06 0.09 -0.12 0.03 -0.12 -0.99
> > and the Image position is:
> > -11.2 -123.2 130.29
> > Does slicer provide a conversion tool for regular Dicoms and Dicom
> > I would really appreciate any advice on what the truth is, or better say,
> > which one i should stick with. any pointers on this topic is also highly
> > appreciate it. I need to understand the mechanics of such conversions and
> > why orientation has a vicarious nature.
> > Thank you very much indeed
> > Pouria
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> Xiaodong Tao
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