[slicer-users] SLICER AND LION

Marco Pinho pinho at nmr.mgh.harvard.edu
Fri Aug 19 23:14:04 EDT 2011


Just as an update:


 I was able to load volumes, use editor normally, create and save labels as niftis normally. 

However when dealing with scene files (loading or even closing a scene) I get repetitive crashes.


 Have you had similar problems?

Best, 

 Marco


P.S. These are the error messages:

------------------------------------------------------------------

WHEN CLOSING SCENE:

X Error of failed request:  BadValue (integer parameter out of range for operation)
  Major opcode of failed request:  128 (Apple-DRI)
  Minor opcode of failed request:  2 ()
  Value in failed request:  0x601a23
  Serial number of failed request:  240170
  Current serial number in output stream:  240170

Launch /Users/MCP/Software/Slicer3-3.6.3-2011-03-04-darwin-x86/bin/Slicer3-real returned with error: child process exited abnormally
 
Error displaying error in a popup: couldn't connect to display "/tmp/launch-CEi2Df/org.macosforge.xquartz:0"

------------------------------------------------------------------


WHEN OPENING SCENE:

XIO:  fatal IO error 0 (Undefined error: 0) on X server "/tmp/launch-CEi2Df/org.macosforge.xquartz:0"
      after 59340 requests (59313 known processed) with 16 events remaining.

Launch /Users/MCP/Software/Slicer3-3.6.3-2011-03-04-darwin-x86/bin/Slicer3-real returned with error: child process exited abnormally
 
Error displaying error in a popup: couldn't connect to display "/tmp/launch-CEi2Df/org.macosforge.xquartz:0"

------------------------------------------------------------------
    


On Aug 19, 2011, at 10:28 PM, Josef Uher wrote:

> Hi Marco,
> 
> You can open terminal from the Applications menu of XQuartz and then run Slicer from that terminal window. I don't know if this is the way to do it, but it works.
> 
> Other option would be to make XQuartz default x11 server, but I didn't want that. Hence, I did not try it.
> 
> Cheers,
> Josef
> 
> 
> On 20/08/2011, at 12:16 , Marco Pinho wrote:
> 
>> Hi Josef and Steve, 
>> 
>>  
>>  Thank you very much for the prompt reply and suggestions.
>> 
>>  I've installed XQuartz successfully. Do you have more specific orientations on how to run Slicer with XQuartz instead of X11?
>> 
>> 
>> Thanks, 
>> 
>>  Marco
>> 
>> On Aug 19, 2011, at 8:23 PM, Josef Uher wrote:
>> 
>>> Hi Marco,
>>> 
>>> We were discussing this issue few days ago. I had the same problem. What helped in my case was installing XQuartz and running Slicer using that instead of X11 that is shipped with Lion.
>>> 
>>> Regards,
>>> Josef
>>> 
>>> 
>>> On 20/08/2011, at 07:52 , Marco Pinho wrote:
>>> 
>>>> Hi, 
>>>>  
>>>>  My name is Marco, I've been a Slicer user for some time and I just started having problems after I updated my Mac to OS 10.7 Lion. When I try to open Slicer I get a "Finalizing Startup" message, and the program freezes after that.
>>>> 
>>>>  Have you had similar problems?
>>>> 
>>>> I'm attaching a screen capture of it.
>>>> 
>>>> Thanks, 
>>>>  
>>>> Marco
>>>> 
>>>> 
>>>> --
>>>> Marco da C. Pinho, M.D.
>>>> pinho at nmr.mgh.harvard.edu
>>>> Research Fellow
>>>> A. A. Martinos Center for Biomedical Imaging
>>>> Massachusetts General Hospital
>>>> 
>>>> 
>>>> 
>>>> 
>>>> 
>>>> <PastedGraphic-1.png>
>>>> 
>>>> 
>>>> 
>>>> 
>>>> 
>>>> 
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>>> 
>> 
>> --
>> Marco da C. Pinho, M.D.
>> pinho at nmr.mgh.harvard.edu
>> Research Fellow
>> A. A. Martinos Center for Biomedical Imaging
>> Massachusetts General Hospital
>> 
>> 
>> 
>> 
>> 
>> 
>> 
>> 
>> 
>> 
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--
Marco da C. Pinho, M.D.
pinho at nmr.mgh.harvard.edu
Research Fellow
A. A. Martinos Center for Biomedical Imaging
Massachusetts General Hospital








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